Hello Tony
Thank you for your response. But I dont think the signal is a Ir signal coming out of the serial port. The signal is completly different timing and pulse width. I think it is probably some serial signal. Like rs232 but so far have not been able to decode it. Could it be ttl.
You're getting rather confused - and mixing apples and oranges. TTL is simply the voltage levels (0-5V), where RS232 more commonly refers to the actual signal itself, and 'most' RS232 is done at TTL levels these days anyway.
In your case, with an antique computer, the serial port should be a 'proper' one, with +/-12V RS232 levels - pretty poor from what you said, with only 6V levels?.
Is there anything on the other serial port pins?, when using ports in 'unusual' ways it's normal to use the handshake lines in strange ways, such as the way 'supposed' serial port PIC programmers work.
Sony SIRC's is pretty simple, and covered in my PIC tutorials, but I doubt you could actually generate the signal directly from a UART? - you could with the handshake lines though.
I would imagine the UART is sending data to a processor in the external module, which then does everything else - but I'd like to think it would just be sending standard RS232 data?.
Bear in mind pins 2 and 3 are input and output, so there should be no data on pin 2, only on pin 3.
Do you have a digital scope?, if so scope what's coming out of pin 3.