What I;m saying is have them cut it, so it includes the nearby parts. They will get cleaner edges than you can or you make a "board: and ask them to just make a stencil. You define the boundries. If you want larger holes so a capacitor can swim in it, do it.
You have c5, c6, c7 and c8. just make a big hole for those components. You need the outline and the pad layer to make the stencil I think.
Fiduciary marks helpful. e.g. make two holes in your phantom PCB and real PCB so you can line things up.