The 90 degree pole is in the frequency domain while the inverting 180 degree shfit you speak off is more in the time domain...(not really, but I am not sure how to say it). The op-amp reacts differently to different frequencies and this is called the frequency response.
You are going to need to know about imaginary/complex numbers for this, specifically the graping of complex numbers on the complex plane and the angles.) Mathematically, a pole is of like the zero or root of a demominator in an equation. When it occurs it causes a divide by zero.
For the transfer function (the equation that represents the response of the system for a particular input frequency component), if a pole appears at zero, this causes the phase of the denominator of the transfer function to be 90 degrees at DC (because a purely imaginary number has a phase of 90 degrees). It causes the transfer function to have a phase-shift of at least 90 degrees right off the start since all frequencies must be zero or greater.
A transfer function with one pole might look something like this:
G/(1-jw),
j is the complex variable a.k.a i or sqrt(-1), w is the frequency in radians per second for the input frequency component you are interested in.
Now, you can see that the denominator 1-jw=0 to occur for a certain w and this will cause a pole at w. A pole at zero will be something like 0-jw. As you can see, this is a purely imaginary number and therefore has a phase of 90 degrees.
Also, the phase shifts introduced by all the the poles at frequencies lower than the frequency of interest accumulate, and this would cause 90+180 = 270 degrees. You see, if there is more than one pole in the system (the transfer function equation) it looks something like this for an equation with 3 poles:
G/(0-jw)(1000-jw)(10000-jw)
For the pole A-jw, when w >> A, the real component is very small relative to the imaginary component and on the complex plane it has an angle approaching 90 degrees. Similarily. when A >>w the real component is very large relative to the imaginary component and this makes an angle very close to the X-axis on the complex plane making it 0 degrees phase- at frequencyes much lower than the pole frequency of a particular pole, it contributes pretty much 0 degrees. So this means that at frequencies much greater than a particular pole frequency, that pole is contributing pretty much 90 degrees of phase shift, in addition to all the other poles lower than your current frequency. They all add up and accumulate. As w get's higher, each pole contributes more and more phase shift...the phase shift from the lower poles doesn't dissapear, you can see it is still there.
Something like that...I'm kinda rusty since summer started.
BTW, to see this your software must be able to simulate the phase response Bode Plot. You won't see it in the magnitude response graph.