Just input pins, right? Outputs should stay what they were (boolean), and you shouldn't have any pins defined as inputs that aren't connected to something.
It's a matter of whether the signals coming into the input pins are still boolean. If it's an analog value or tristated, something may need to be done. So you need to look at what the other hardware is doing when you're going to sleep. In some cases, you could disable the other components and if that causes the other component to tristate, you can reconfigure the pin as an output. Just be sure you configure it back to an input before reenabling the other hardware.