Yes, the transformer is connected separate and the 3 red circled terminals goes to the primary winding. It's a flyback transformer. the primary is woven according to the requirement and it's center tapped. The middle red circle is the center tap. What I need to know if I can use the center tap as the zero voltage compared to the other two terminals ? That means I want to take the secondary output which is also a sine output and use the center tap as the reference (zero voltage). to measure the output voltage ?