You need VERY closely matched batteries or there will be significant energy loss in the imbalances between the two packs. If you're going to be using any cell in parallel you need to make sure they are as close as possible if not directly next to each other in the assembly line during production as they're going to have virtually identical charge/discharge and 'wear' characteristics.
Generally you don't parallel many cells though. In the hobby aircraft industry parallel packs are used a lot with Lithium cells because they don't handle high currents well. Usually it's something like 2 parallel cell packs, but FMA Direct cells intelligent battery monitors/chargers that are for balancing up to 15 packs in parallel, because lipoly packs are so much lighter than any other battery technology they do the parallel bit to make up for their shortcomings.