You were probably looking at schematics of multivibrators that used NPN transistors, in which case connecting the negative pole to the base would be correct. In reality, it's not important which transistor lead connects to which capacitor lead. It's important the the positive cap lead connects to the more positive part of the circuit, which in your case, is the transistor base. Think of which way current will flow into the cap. Positive current should flow into the positive lead.