The circuits I posted does exactly what I want it too.
The blue circuit will just be controlled by the pulsevu.
I'v also got some red and purple LEDs, and I saw a video of someone with something similar on a nintendo DS, set up so one circuit controlled by the pulse and another directly controlled by an inverter so it fades in as the other fades out. I guess I'm just being greedy.
I want the red and purple circuits so I can turn them off (with a centre off Dpdt), or have one setting where it will be controlled by the pulsevu (the left side of the DPDT, with the power source being the same as the blue circuit, and it's ground going to the pulse vu), or so that its inverted by the other circuit being on (the right side of the DPDT with the power source coming through the inverted, and changing to a normal ground point instead of going to the pulse VU.
I see what you mean by the series inverter, but wouldn't that mean it would only be an inverted circuit, and no way to have it controlled by the pulse. The circuit I posted pics of does everything I want it too.