Did you add the base-emitter resistor I suggested, to Q2?
And a capacitor across the circuit power input?
There is nothing at all wrong with bipolar transistors - IF you use an appropriate one for an application.
A FET gate is purely voltage-driven, with a bit of capacitance.
Bipolar transistors are current driven. The TIP41 could need anything from 30mA up to 100mA to fully turn on with a one amp load, so even ignoring its speed, it's very marginal in a circuit such as that.