It must be getting late for you?
It's Vt. Vt is a 0 V (low/off) or 12 V (high/run) that determines whether or not the pump will run.
Vt HAS to be connected to a LOGIC HIGH in order for the pump to run. +12 is a logic high. The UNUSED pin on the IC is also a logic high, so either will work.
So, what I was saying earlier is that Vth, +12, Alarm, Logic ground are basically LOGIC power and SIGNALS. If you had a 5 pin connector and duplicated +12 (i.e. tied them together), the extra pin becomes a LOGIC high.
Although, I think you built dual pump drivers, so:
LOW, vt1, HIGH, LOW, vt2, HIGH, Alarm1, Alarm2, +12, GND
Would probably make a good start for a connector arrangement. An accidently reversed connector wouldn't likely do much damage. It might not be a good arrangement either.
But, look at it this way, with the board out, you could power it easily or could connect vt1 or Vt2 to LOW or HIGH. Some pins would be unused, but would allow EASY troubleshooting. or would be used in a constant ON mode.
Dumb example, but nonetheless an example. You could have two dangling harnesses (female connectors), that when installed one would run motor A and the other motor B.
Now, it might make more sense to make the ALARM connectors separate. You could have a connector labeled (+12, GND, Alarm1 and Alarm2) on another connector and drop Alarm1 and Alarm2 from the first one.
Don't forget a connector for Vsense1, Vsense1 Gnd, Vsense2, Vsense2 GND
Basically connects across R2. You may not connect this to anything but a meter. Without a connector, it's just a test point.
And then we were all thinking depluggable screw terminals for power in and motors.
I think we are still up in the air as to whether the voltages need to be reduced to 18 V max.