I agree with MacIntoshCZ. Please post a clear image.
Do you want an On-Off switch?
I would suggest that you should be able to run from a single CR2032. The BNO080/BNO085 will work from 1.7 to 3.6 V, and the ATmega32U4 will work down to 2.7 V.
A CR2032 is about 80% depleted at 2.7 V, so you will have to throw away the battery having used 80% of its capacity.
If you put two CR2032s in series, you will be able to use them to the point where they are completely flat. However you are using two, not one, and taking the same current from each that you would take from one, so the half of the energy in the batteries will have ended up just heating the voltage regulator.
Just put two in parallel, or use a larger cell, like a CR2450, and don't bother with the regulator.