Hi misterT,
Did you mean the Atmel Studio 6.2 Beta? I have Win 8.1 on my laptop.
I bought 3 extra 328 uControllers. The one that was on the board I boot loaded with the Arduino IDE.
I want to boot load a different chip for the Atmel Studio 6. All I see on the webpage is 6.1 & 6.2.
The Atmel Studio 6.2 Beta is good. Go with that. I have not found any problems with it so far.. only improvements.
If you do not have a programmer, then you need a bootloader in the uControllers and then use the arduino software to program the hex into the uC.. or you can use the arduino as an In System Programmer..