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You should use a much larger Gate-Source Voltage than the threshold voltage. The threshold voltage is the voltage at which the MOSFET starts to turn on. To get the best resistance you need more voltage. The NTMFS5C612NL has a threshold voltage of 1.2 - 2 V, but that is at a drain current of 250 μA. To get the typical 1.2 mOhm you need 10 V on the gate.
If it's a negative-earth vehicle, when the dynamo is off, the MOSFET source will need to be a 0 V, so the gate will have to be at 0V as well. When the dynamo is generating, the drain and source will be about 7 V, and the gate will have to be at 17 V to get the best resistance. You don't really need any current at 17 V and you will have the big advantage of little heat being generated, but you certainly won't be able to use the 3.3 V output of the GPU to drive the gate.