Putting identical transformers in parallel with the same phase doubles the current sourcing capability.
On the deepfriedneon page, the frequency, voltage, and current of the transformer is fixed, and should not be changed. It should be set to match the transformer(s) you have. The calculator will then give you the optimal capacitance value. You then use that capacitance to determine the required primary coil inductance in order to match the resonant frequency of your secondary circuit using the formula, f=1/(2*pi*sqrt(L*C)).